miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|51946820|gb|CV161556.1|CV161556 GCATTTTCGTCCTCCGCGACAACCAGCATGACTAAATTCGGCAACTTGACGACAGATTCCGGCATTGGAGCCCTGAACGA
TTACTTGGGTGACAGAAGCTACGTGGAAGGACACTCTCCGAGCCAAGCTGATGTGGCAGTGTTTGAGGGCCTGGGCAGGG
CACCAAACCCACAGTTTGCGCATGCCCTGCGCTGGTACTCTCACATCTCCTCCTTTGGTGCTGGCAGATCAAAGTTCCCC
GGCAGCAAGCCGGCCTCACCACCCAAAGTGGAGGTGAAGGAGGAGGAGGAGGATGATGATGAGGTGGACCTGTTTGGCTC
TGATGATGATGAGGAGGAGGATGCTGAGGCTGCCAGGGTGAGGGAGGAGCGCCTCGCCAGCTATGCAGCAAAGAAGGCAG
CCAAGCCAGGCCCCATTGCCAAGTCTCAGATCTTGTTGGATTGCAAGCCTTGGGACGACGAGACAGACATGAAGGCCATG
GAAGATATGGTCCGAACTATCTCCATGGATGGACTTGTTTGGGGTGCTAGTAAGCTCAATCCTCTTGCATTTGGCATCAT
GAAGCTGAGCATTCTGTGTACTGTGGAGGAACGCCAAGTGTCAGTGGACGACCTCATTGAGAAGATCATAGAGTTTGAAG
ACTTTGTGCAGAGTGTGGATGTAGCAGCCTTCAACAAGTCTAGGGCTGCTGCTGCTGCTGCTGCTT




Most similar to sp|P29522|EF1B2_BOMMO

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P29522|EF1B2_BOMMO Elongation factor 1-beta' OS=Bombyx mori PE=1
           SV=2
          Length = 222

 Score =  190 bits (483), Expect = 7e-48
 Identities = 106/219 (48%), Positives = 131/219 (59%), Gaps = 6/219 (2%)
 Frame = +1

Query: 40  GNLTTDSGIGALNDYLGDRSYVEGHSPSQADVAVFEGLGRAPNPQFAHALRWYSHISSFG 219
           G++ T  G+  LN YL ++SYV G++PSQADV VFE +G+AP     H LRWY+ I+S+ 
Sbjct: 4   GDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYT 63

Query: 220 AGRSKF--PGSKP----ASPPXXXXXXXXXXXXXXXLFGSXXXXXXXXXXXXXXXXXLAS 381
           +   K    G+ P    A P                LFGS                 L +
Sbjct: 64  SAERKTWSQGTSPLTAGAKPTAPAPAAKDDDDDDVDLFGSGDEEEDAEAERIREER-LKA 122

Query: 382 YXXXXXXXPGPIAKSQILLDCKPWDDETDMKAMEDMVRTISMDGLVWGASKLNPLAFGIM 561
           Y       P  IAKS ILLD KPWDDETDMK ME+ VRTI M+GL+WGASKL P+ +GI 
Sbjct: 123 YADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGIN 182

Query: 562 KLSILCTVEERQVSVDDLIEKIIEFEDFVQSVDVAAFNK 678
           KL I+C +E+ +VSVD L EKI EFEDFVQSVD+AAFNK
Sbjct: 183 KLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 221